Research workbench
AlphaFold monomer V2.0 prediction for endogenous retrovirus group K member 9 pol protein (P63128)
Analyse AlphaFold monomer V2.0 prediction for endogenous retrovirus group K member 9… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P63128
- Type
- protein
- Length
- 1,117 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0204A0157F7477ACd6F633Ee7D7CDc7809b7eD13
- Molecule
- Endogenous retrovirus group K member 9 pol protein
- UniProt
- P63128
- Pockets
- 10 · best druggability 0.60
Structure
1 distinct chain · 29% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endogenous retrovirus group K member 9 pol protein | protein | 1117 | 29% helix, 11% strand | P63128 |
Pockets
10 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 389 | 0.60 | 0.76 | 40 | empty |
| 2 | 154 | 0.49 | 0.77 | 24 | empty |
| 3 | 113 | 0.45 | 0.78 | 19 | empty |
| 4 | 155 | 0.43 | 0.74 | 20 | empty |
| 5 | 131 | 0.37 | 0.73 | 23 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6SA9 · Endogenous retrovirus HML2 capsid ntd · an experimental structure of the same protein · chain A against A, TM-score 0.12
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P63128
- Elsewhere: UniProt P63128 · AlphaFold DB P63128
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