Research workbench
AlphaFold monomer V2.0 prediction for probable outer membrane protein pmpb (Q9PJY2)
Analyse AlphaFold monomer V2.0 prediction for probable outer membrane protein pmpb… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9PJY2
- Type
- protein
- Length
- 1,672 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x40b443D90A56078479b1676202c75fFef89932e1
- Molecule
- Probable outer membrane protein pmpb
- UniProt
- Q9PJY2
- Pockets
- 10 · best druggability 0.81
Structure
1 distinct chain · 3% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable outer membrane protein pmpb | protein | 1672 | 3% helix, 48% strand | Q9PJY2 |
Pockets
10 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 135 | 0.81 | 0.99 | 26 | empty |
| 2 | 250 | 0.51 | 0.75 | 35 | empty |
| 3 | 90 | 0.37 | 0.76 | 24 | empty |
| 4 | 102 | 0.35 | 0.74 | 25 | empty |
| 5 | 64 | 0.34 | 0.76 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9PJY2
- Elsewhere: UniProt Q9PJY2 · AlphaFold DB Q9PJY2
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