Research workbench
AlphaFold monomer V2.0 prediction for pectinesterase 2 (O04887)
Analyse AlphaFold monomer V2.0 prediction for pectinesterase 2 (O04887) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O04887
- Type
- protein
- Length
- 510 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5e58272ea25a05e06901A2eAe9f63939b344e0c6
- Molecule
- Pectinesterase 2
- UniProt
- O04887
- Pockets
- 4 · best druggability 0.70
Structure
1 distinct chain · 31% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pectinesterase 2 | protein | 510 | 31% helix, 24% strand | O04887 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 692 | 0.70 | 0.77 | 68 | empty |
| 2 | 116 | 0.47 | 0.79 | 29 | empty |
| 3 | 74 | 0.44 | 0.81 | 13 | empty |
| 4 | 81 | 0.42 | 0.80 | 20 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O04887
- Elsewhere: UniProt O04887 · AlphaFold DB O04887
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