Research workbench
AlphaFold monomer V2.0 prediction for metalloprotease pmba (P0AFK1)
Analyse AlphaFold monomer V2.0 prediction for metalloprotease pmba (P0AFK1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0AFK1
- Type
- protein
- Length
- 450 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xc785fb0860a7632894499957946e549eec043885
- Molecule
- Metalloprotease pmba
- UniProt
- P0AFK1
- Pockets
- 5 · best druggability 0.42
Structure
1 distinct chain · 27% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Metalloprotease pmba | protein | 450 | 27% helix, 37% strand | P0AFK1 |
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 130 | 0.42 | 0.75 | 20 | empty |
| 2 | 152 | 0.40 | 0.74 | 26 | empty |
| 3 | 83 | 0.38 | 0.76 | 16 | empty |
| 4 | 51 | 0.32 | 0.77 | 14 | empty |
| 5 | 77 | 0.30 | 0.73 | 19 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AFK1
- Elsewhere: UniProt P0AFK1 · AlphaFold DB P0AFK1
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