Research workbench
AlphaFold monomer V2.0 prediction for pectate lyase (P40973)
Analyse AlphaFold monomer V2.0 prediction for pectate lyase (P40973) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P40973
- Type
- protein
- Length
- 434 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x56679c99FFEB4668142c4774dD42E1A30e9be883
- Molecule
- Pectate lyase
- UniProt
- P40973
- Pockets
- 5 · best druggability 0.57
Structure
1 distinct chain · 17% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pectate lyase | protein | 434 | 17% helix, 29% strand | P40973 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 124 | 0.57 | 0.84 | 30 | empty |
| 2 | 68 | 0.37 | 0.78 | 16 | empty |
| 3 | 85 | 0.32 | 0.73 | 18 | empty |
| 4 | 53 | 0.30 | 0.76 | 15 | empty |
| 5 | 59 | 0.27 | 0.73 | 13 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P40973
- Elsewhere: UniProt P40973 · AlphaFold DB P40973
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