Research workbench
AlphaFold monomer V2.0 prediction for pectate disaccharide-lyase (Q05526)
Analyse AlphaFold monomer V2.0 prediction for pectate disaccharide-lyase (Q05526) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q05526
- Type
- protein
- Length
- 543 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x6A9Ec001Bc00FA7B5ca9B36332E57e2641f2d127
- Molecule
- Pectate disaccharide-lyase
- UniProt
- Q05526
- Pockets
- 5 · best druggability 0.62
Structure
1 distinct chain · 49% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pectate disaccharide-lyase | protein | 543 | 49% helix, 13% strand | Q05526 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 474 | 0.62 | 0.76 | 47 | empty |
| 2 | 80 | 0.44 | 0.81 | 22 | empty |
| 3 | 105 | 0.38 | 0.75 | 21 | empty |
| 4 | 70 | 0.32 | 0.75 | 16 | empty |
| 5 | 54 | 0.31 | 0.76 | 10 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q05526
- Elsewhere: UniProt Q05526 · AlphaFold DB Q05526
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