Research workbench
AlphaFold monomer V2.0 prediction for periplasmic pectate lyase (P14005)
Analyse AlphaFold monomer V2.0 prediction for periplasmic pectate lyase (P14005) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P14005
- Type
- protein
- Length
- 568 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xCF9F00f1Afe6fF25D997501B56BB9EF23263a32C
- Molecule
- Periplasmic pectate lyase
- UniProt
- P14005
- Pockets
- 4 · best druggability 0.71
Structure
1 distinct chain · 43% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic pectate lyase | protein | 568 | 43% helix, 13% strand | P14005 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 947 | 0.71 | 0.75 | 81 | empty |
| 2 | 149 | 0.55 | 0.81 | 18 | empty |
| 3 | 120 | 0.45 | 0.77 | 20 | empty |
| 4 | 56 | 0.27 | 0.73 | 13 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P14005
- Elsewhere: UniProt P14005 · AlphaFold DB P14005
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