Research workbench
AlphaFold monomer V2.0 prediction for pectate lyase E (Q5B7Z3)
Analyse AlphaFold monomer V2.0 prediction for pectate lyase E (Q5B7Z3) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q5B7Z3
- Type
- protein
- Length
- 254 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x21f799EBE15eca4b9FBc37a241c496cbDd196f0e
- Molecule
- Pectate lyase E
- UniProt
- Q5B7Z3
- Pockets
- 2 · best druggability 0.40
Structure
1 distinct chain · 2% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pectate lyase E | protein | 254 | 2% helix, 49% strand | Q5B7Z3 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 150 | 0.40 | 0.74 | 25 | empty |
| 2 | 52 | 0.27 | 0.74 | 18 | empty |
Modifications
Observed in the structure: 5 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5B7Z3
- Elsewhere: UniProt Q5B7Z3 · AlphaFold DB Q5B7Z3
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