Research workbench
AlphaFold monomer V2.0 prediction for probable pectate lyase 13 (Q93Z04)
Analyse AlphaFold monomer V2.0 prediction for probable pectate lyase 13 (Q93Z04) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q93Z04
- Type
- protein
- Length
- 501 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0D671490EE06E75975e90D7F99F73B20BE618744
- Molecule
- Probable pectate lyase 13
- UniProt
- Q93Z04
- Pockets
- 4 · best druggability 0.51
Structure
1 distinct chain · 21% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable pectate lyase 13 | protein | 501 | 21% helix, 25% strand | Q93Z04 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 125 | 0.51 | 0.81 | 23 | empty |
| 2 | 117 | 0.48 | 0.80 | 22 | empty |
| 3 | 94 | 0.36 | 0.75 | 18 | empty |
| 4 | 59 | 0.33 | 0.77 | 14 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q93Z04
- Elsewhere: UniProt Q93Z04 · AlphaFold DB Q93Z04
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