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AlphaFold monomer V2.0 prediction for 5'-3' exonuclease PLD4 (Q96BZ4)

Analyse AlphaFold monomer V2.0 prediction for 5'-3' exonuclease PLD4 (Q96BZ4) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q96BZ4
Type: protein
Length: 506 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x78Cc7f9BF18AF8279e492D45EE7Fe9d7cC6f6D07
Molecule: 5'-3' exonuclease PLD4
UniProt: Q96BZ4
Pockets: 1 · best druggability 0.62

Structure

1 distinct chain · 31% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	5'-3' exonuclease PLD4	protein	506	31% helix, 22% strand	Q96BZ4

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	324	0.62	0.79	41	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

8V08 · Crystal structure of human PLD4 co-crystallized with 5'Pi-ssDNA · an experimental structure of the same protein · chain A against A, TM-score 0.76

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q96BZ4
Elsewhere: UniProt Q96BZ4 · AlphaFold DB Q96BZ4

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