Research workbench
AlphaFold monomer V2.0 prediction for polyketide biosynthesis acyltransferase homolog pksd (O34877)
Analyse AlphaFold monomer V2.0 prediction for polyketide biosynthesis acyltransferase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O34877
- Type
- protein
- Length
- 324 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x57764D56d6101A81058fB5c5E4A885853213A02B
- Molecule
- Polyketide biosynthesis acyltransferase homolog pksd
- UniProt
- O34877
- Pockets
- 2 · best druggability 0.65
Structure
1 distinct chain · 48% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyketide biosynthesis acyltransferase homolog pksd | protein | 324 | 48% helix, 14% strand | O34877 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 201 | 0.65 | 0.84 | 36 | empty |
| 2 | 67 | 0.33 | 0.76 | 14 | empty |
Compared structures
- 8AW0 · Crystal structure of PksD, the trans-acting acyl hydrolase domain from the bacillaene… · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 8AVZ · Crystal structure of PksD, the trans-acting acyl hydrolase domain from the bacillaene… · an experimental structure of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O34877
- Elsewhere: UniProt O34877 · AlphaFold DB O34877
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