Research workbench
AlphaFold monomer V2.0 prediction for non-reducing polyketide synthase pkda (Q5BG07)
Analyse AlphaFold monomer V2.0 prediction for non-reducing polyketide synthase pkda… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q5BG07
- Type
- protein
- Length
- 2,476 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xb3c0C983Fc44934AC589D7131C08a72544EBB92E
- Molecule
- Non-reducing polyketide synthase pkda
- UniProt
- Q5BG07
- Pockets
- 20 · best druggability 0.77
Structure
1 distinct chain · 42% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Non-reducing polyketide synthase pkda | protein | 2476 | 42% helix, 17% strand | Q5BG07 |
Pockets
20 pockets found on a 1 Å grid, 15 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 602 | 0.77 | 0.83 | 72 | empty |
| 2 | 635 | 0.76 | 0.82 | 76 | empty |
| 3 | 231 | 0.76 | 0.90 | 34 | empty |
| 4 | 265 | 0.68 | 0.84 | 35 | empty |
| 5 | 390 | 0.67 | 0.80 | 57 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5BG07
- Elsewhere: UniProt Q5BG07 · AlphaFold DB Q5BG07
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