Research workbench
AlphaFold monomer V2.0 prediction for type IV pilus assembly protein pilc (Q1D0A0)
Analyse AlphaFold monomer V2.0 prediction for type IV pilus assembly protein pilc… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q1D0A0
- Type
- protein
- Length
- 417 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x81FFd8C96E4A5454E3d65dFf78C1042d8fF7DAdA
- Molecule
- Type IV pilus assembly protein pilc
- UniProt
- Q1D0A0
- Pockets
- 3 · best druggability 0.57
Structure
1 distinct chain · 71% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Type IV pilus assembly protein pilc | protein | 417 | 71% helix, 6% strand | Q1D0A0 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 252 | 0.57 | 0.78 | 29 | empty |
| 2 | 148 | 0.41 | 0.74 | 20 | empty |
| 3 | 63 | 0.32 | 0.75 | 13 | empty |
Compared structures
- 3JC8 · Architectural model of the type IVa pilus machine in a piliated state · an experimental structure of the same protein · chain A against Ca, TM-score 0.41
- 3JC9 · Architectural model of the type IVa pilus machine in a non-piliated state · an experimental structure of the same protein · chain A against Ca, TM-score 0.41
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1D0A0
- Elsewhere: UniProt Q1D0A0 · AlphaFold DB Q1D0A0
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