Research workbench
AlphaFold monomer V2.0 prediction for gpi mannosyltransferase 3 (Q9VZM5)
Analyse AlphaFold monomer V2.0 prediction for gpi mannosyltransferase 3 (Q9VZM5) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9VZM5
- Type
- protein
- Length
- 561 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x3639908Ea9460962ad4f6d308d2b32E104BaF088
- Molecule
- Gpi mannosyltransferase 3
- UniProt
- Q9VZM5
- Pockets
- 8 · best druggability 0.79
Structure
1 distinct chain · 61% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gpi mannosyltransferase 3 | protein | 561 | 61% helix, 5% strand | Q9VZM5 |
Pockets
8 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1147 | 0.79 | 0.81 | 91 | empty |
| 2 | 186 | 0.49 | 0.76 | 19 | empty |
| 3 | 126 | 0.46 | 0.78 | 23 | empty |
| 4 | 54 | 0.35 | 0.79 | 14 | empty |
| 5 | 77 | 0.33 | 0.75 | 14 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9VZM5
- Elsewhere: UniProt Q9VZM5 · AlphaFold DB Q9VZM5
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