Research workbench
AlphaFold monomer V2.0 prediction for phytochrome D (P42497)
Analyse AlphaFold monomer V2.0 prediction for phytochrome D (P42497) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P42497
- Type
- protein
- Length
- 1,164 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xE3A42901fFfDf2D2CC16cFfb7eE3032b1E42F175
- Molecule
- Phytochrome D
- UniProt
- P42497
- Pockets
- 11 · best druggability 0.83
Structure
1 distinct chain · 40% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phytochrome D | protein | 1164 | 40% helix, 23% strand | P42497 |
Pockets
11 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 508 | 0.83 | 0.89 | 62 | empty |
| 2 | 997 | 0.72 | 0.76 | 83 | empty |
| 3 | 193 | 0.54 | 0.79 | 29 | empty |
| 4 | 256 | 0.54 | 0.76 | 37 | empty |
| 5 | 52 | 0.42 | 0.83 | 15 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42497
- Elsewhere: UniProt P42497 · AlphaFold DB P42497
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