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AlphaFold monomer V2.0 prediction for deoxyribodipyrimidine photo- lyase (P00914)

Analyse AlphaFold monomer V2.0 prediction for deoxyribodipyrimidine photo- lyase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: P00914
Type: protein
Length: 472 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x7a1388B6Aad67B04634A32f63b8A6D6005eab86c
Molecule: Deoxyribodipyrimidine photo-lyase
UniProt: P00914
Pockets: 5 · best druggability 0.82

Structure

1 distinct chain · 52% helix, 6% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Deoxyribodipyrimidine photo-lyase	protein	472	52% helix, 6% strand	P00914

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	514	0.82	0.88	44	empty
2	231	0.77	0.91	38	empty
3	85	0.39	0.77	18	empty
4	79	0.31	0.74	13	empty
5	50	0.28	0.75	13	empty

Compared structures

1DNP · Structure of deoxyribodipyrimidine photolyase · an experimental structure of the same protein · chain A against A, TM-score 0.99
1DNP · Structure of deoxyribodipyrimidine photolyase · an experimental structure of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00914
Elsewhere: UniProt P00914 · AlphaFold DB P00914

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