Research workbench
AlphaFold monomer V2.0 prediction for virulence sensor histidine kinase phoq (P0DM80)
Analyse AlphaFold monomer V2.0 prediction for virulence sensor histidine kinase phoq… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0DM80
- Type
- protein
- Length
- 487 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x35612D34a32C306CA4fc1edA9360D1F717e25950
- Molecule
- Virulence sensor histidine kinase phoq
- UniProt
- P0DM80
- Pockets
- 4 · best druggability 0.67
Structure
1 distinct chain · 53% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Virulence sensor histidine kinase phoq | protein | 487 | 53% helix, 18% strand | P0DM80 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 351 | 0.67 | 0.81 | 48 | empty |
| 2 | 214 | 0.51 | 0.76 | 19 | empty |
| 3 | 55 | 0.33 | 0.78 | 13 | empty |
| 4 | 61 | 0.31 | 0.75 | 13 | empty |
Compared structures
- 4UEY · Structure of the periplasmic domain phoq double mutant (W104C-A128C) · an experimental structure of the same protein · chain A against A, TM-score 0.28
- 4UEY · Structure of the periplasmic domain PhoQ double mutant (W104C-A128C) · an experimental structure of the same protein · chain A against A, TM-score 0.28
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DM80
- Elsewhere: UniProt P0DM80 · AlphaFold DB P0DM80
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