Research workbench
AlphaFold monomer V2.0 prediction for periplasmic [nife] hydrogenase small subunit (P12943)
Analyse AlphaFold monomer V2.0 prediction for periplasmic [nife] hydrogenase small… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P12943
- Type
- protein
- Length
- 288 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xCDe39d37AEBb0A179feeF79ac73A0E0077BD5055
- Molecule
- Periplasmic [nife] hydrogenase small subunit
- UniProt
- P12943
- Pockets
- 1 · best druggability 0.52
Structure
1 distinct chain · 41% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic [nife] hydrogenase small subunit | protein | 288 | 41% helix, 15% strand | P12943 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 185 | 0.52 | 0.78 | 38 | empty |
Compared structures
- 2FRV · Crystal structure of the oxidized form of ni-fe hydrogenase · an experimental structure of the same protein · chain A against S, TM-score 0.90
- 2FRV · Crystal structure of the oxidized form of ni-fe hydrogenase · an experimental structure of the same protein · chain A against S, TM-score 0.90
- 1YQ9 · Structure of the unready oxidized form of [NiFe] hydrogenase · an experimental structure of the same protein · chain A against A, TM-score 0.90
- 1YQ9 · Structure of the unready oxidized form of [nife] hydrogenase · an experimental structure of the same protein · chain A against A, TM-score 0.90
- 1FRV · Crystal structure of the oxidized form of ni-fe hydrogenase · an experimental structure of the same protein · chain A against A, TM-score 0.90
- 1FRV · Crystal structure of the oxidized form of ni-fe hydrogenase · an experimental structure of the same protein · chain A against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P12943
- Elsewhere: UniProt P12943 · AlphaFold DB P12943
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