Research workbench
AlphaFold monomer V2.0 prediction for periplasmic [fe] hydrogenase large subunit (P07598)
Analyse AlphaFold monomer V2.0 prediction for periplasmic [fe] hydrogenase large… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P07598
- Type
- protein
- Length
- 421 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x78Cc7f9BF18AF8279e492D45EE7Fe9d7cC6f6D07
- Molecule
- Periplasmic [fe] hydrogenase large subunit
- UniProt
- P07598
- Pockets
- 4 · best druggability 0.78
Structure
1 distinct chain · 43% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic [fe] hydrogenase large subunit | protein | 421 | 43% helix, 14% strand | P07598 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 89 | 0.78 | 0.99 | 28 | empty |
| 2 | 132 | 0.48 | 0.79 | 25 | empty |
| 3 | 94 | 0.42 | 0.78 | 15 | empty |
| 4 | 58 | 0.31 | 0.75 | 12 | empty |
Compared structures
- 1HFE · 1.6 a resolution structure of the fe-only hydrogenase from desulfovibrio desulfuricans · an experimental structure of the same protein · chain A against L, TM-score 0.93
- 1HFE · 1.6 a resolution structure of the fe-only hydrogenase from desulfovibrio desulfuricans · an experimental structure of the same protein · chain A against L, TM-score 0.93
- 8BJ7 · Desulfovibrio desulfuricans FeFe Hydrogenase C178A mutant in Hinact-like state · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 8BJ8 · Desulfovibrio desulfuricans FeFe Hydrogenase C178A mutant in Htrans-like state · an experimental structure of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07598
- Elsewhere: UniProt P07598 · AlphaFold DB P07598
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