Research workbench
AlphaFold monomer V2.0 prediction for probable exopolygalacturonase B (B0YAA4)
Analyse AlphaFold monomer V2.0 prediction for probable exopolygalacturonase B (B0YAA4) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B0YAA4
- Type
- protein
- Length
- 453 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5f0d51eda5E84Bb14cC2174Ca1F98fBDd28F758C
- Molecule
- Probable exopolygalacturonase B
- UniProt
- B0YAA4
- Pockets
- 3 · best druggability 0.70
Structure
1 distinct chain · 11% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable exopolygalacturonase B | protein | 453 | 11% helix, 47% strand | B0YAA4 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 97 | 0.70 | 0.93 | 23 | empty |
| 2 | 123 | 0.45 | 0.78 | 23 | empty |
| 3 | 92 | 0.32 | 0.73 | 20 | empty |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B0YAA4
- Elsewhere: UniProt B0YAA4 · AlphaFold DB B0YAA4
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