Research workbench
AlphaFold monomer V2.0 prediction for peptidoglycan-recognition protein sa (Q9VYX7)
Analyse AlphaFold monomer V2.0 prediction for peptidoglycan-recognition protein sa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9VYX7
- Type
- protein
- Length
- 203 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x8d96d6Ee1CD7B2e188d9779006d86D77205A1292
- Molecule
- Peptidoglycan-recognition protein sa
- UniProt
- Q9VYX7
- Pockets
- 1 · best druggability 0.40
Structure
1 distinct chain · 28% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptidoglycan-recognition protein sa | protein | 203 | 28% helix, 17% strand | Q9VYX7 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 72 | 0.40 | 0.79 | 22 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 1S2J · Crystal structure of the Drosophila pattern-recognition receptor PGRP-SA · an experimental structure of the same protein · chain A against B, TM-score 0.82
- 1S2J · Crystal structure of the drosophila pattern-recognition receptor pgrp-sa · an experimental structure of the same protein · chain A against B, TM-score 0.82
- 1SXR · Drosophila peptidoglycan recognition protein (pgrp)-sa · an experimental structure of the same protein · chain A against A, TM-score 0.82
- 1SXR · Drosophila Peptidoglycan Recognition Protein (PGRP)-SA · an experimental structure of the same protein · chain A against A, TM-score 0.82
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9VYX7
- Elsewhere: UniProt Q9VYX7 · AlphaFold DB Q9VYX7
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