Research workbench
AlphaFold monomer V2.0 prediction for peptidoglycan-recognition protein lf (Q8SXQ7)
Analyse AlphaFold monomer V2.0 prediction for peptidoglycan-recognition protein lf… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8SXQ7
- Type
- protein
- Length
- 369 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xBABc9DC7023be831DDdB1D7F196c6336E7D131B7
- Molecule
- Peptidoglycan-recognition protein lf
- UniProt
- Q8SXQ7
- Pockets
- 2 · best druggability 0.57
Structure
1 distinct chain · 33% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptidoglycan-recognition protein lf | protein | 369 | 33% helix, 18% strand | Q8SXQ7 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 317 | 0.57 | 0.76 | 36 | empty |
| 2 | 230 | 0.52 | 0.76 | 29 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 2XZ4 · Crystal structure of the LFZ ectodomain of the peptidoglycan recognition protein LF · an experimental structure of the same protein · chain A against A, TM-score 0.44
- 2XZ4 · Crystal structure of the lfz ectodomain of the peptidoglycan recognition protein lf · an experimental structure of the same protein · chain A against A, TM-score 0.44
- 2XZ8 · Crystal structure of the lfw ectodomain of the peptidoglycan recognition protein lf · an experimental structure of the same protein · chain A against A, TM-score 0.36
- 2XZ8 · Crystal structure of the lfw ectodomain of the peptidoglycan recognition protein lf · an experimental structure of the same protein · chain A against A, TM-score 0.36
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8SXQ7
- Elsewhere: UniProt Q8SXQ7 · AlphaFold DB Q8SXQ7
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