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AlphaFold monomer V2.0 prediction for cyclic-di-AMP phosphodiesterase pgph (A0A0H3GGY3)
Analyse AlphaFold monomer V2.0 prediction for cyclic-di-AMP phosphodiesterase pgph… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A0A0H3GGY3
- Type
- protein
- Length
- 718 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x04F7E64be17ea195bC6569B7f37E10157FeF941b
- Molecule
- Cyclic-di-AMP phosphodiesterase pgph
- Pockets
- 5 · best druggability 0.65
Structure
1 distinct chain · 70% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cyclic-di-AMP phosphodiesterase pgph | protein | 718 | 70% helix, 3% strand | — |
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 465 | 0.65 | 0.78 | 34 | empty |
| 2 | 446 | 0.63 | 0.76 | 36 | empty |
| 3 | 478 | 0.59 | 0.74 | 50 | empty |
| 4 | 124 | 0.57 | 0.83 | 22 | empty |
| 5 | 80 | 0.36 | 0.76 | 22 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
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