Research workbench
AlphaFold monomer V2.0 prediction for polygalacturonase (Q02096)
Analyse AlphaFold monomer V2.0 prediction for polygalacturonase (Q02096) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q02096
- Type
- protein
- Length
- 462 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x025f3b1a898b05AD2731bE6Ab72687b5920c4A3F
- Molecule
- Polygalacturonase
- UniProt
- Q02096
- Pockets
- 6 · best druggability 0.56
Structure
1 distinct chain · 11% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polygalacturonase | protein | 462 | 11% helix, 43% strand | Q02096 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 70 | 0.56 | 0.87 | 18 | empty |
| 2 | 281 | 0.56 | 0.77 | 51 | empty |
| 3 | 345 | 0.55 | 0.75 | 44 | empty |
| 4 | 56 | 0.45 | 0.83 | 12 | empty |
| 5 | 122 | 0.44 | 0.77 | 17 | empty |
Modifications
Observed in the structure: 5 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q02096
- Elsewhere: UniProt Q02096 · AlphaFold DB Q02096
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