Research workbench
AlphaFold monomer V2.0 prediction for phosphoglycerate kinase 1 (Q5NVB5)
Analyse AlphaFold monomer V2.0 prediction for phosphoglycerate kinase 1 (Q5NVB5) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q5NVB5
- Type
- protein
- Length
- 417 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x025f3b1a898b05AD2731bE6Ab72687b5920c4A3F
- Molecule
- Phosphoglycerate kinase 1
- UniProt
- Q5NVB5
- Pockets
- 3 · best druggability 0.52
Structure
1 distinct chain · 41% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphoglycerate kinase 1 | protein | 417 | 41% helix, 19% strand | Q5NVB5 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 270 | 0.52 | 0.75 | 38 | empty |
| 2 | 144 | 0.48 | 0.78 | 39 | empty |
| 3 | 81 | 0.38 | 0.77 | 16 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5NVB5
- Elsewhere: UniProt Q5NVB5 · AlphaFold DB Q5NVB5
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