Research workbench
AlphaFold monomer V2.0 prediction for pepsin a (P11489)
Analyse AlphaFold monomer V2.0 prediction for pepsin a (P11489) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P11489
- Type
- protein
- Length
- 388 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xbb2F1C7CB3A1eeFAc24fCa72cc627162D5413FD7
- Molecule
- Pepsin a
- UniProt
- P11489
- Pockets
- 3 · best druggability 0.61
Structure
1 distinct chain · 19% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pepsin a | protein | 388 | 19% helix, 38% strand | P11489 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 229 | 0.61 | 0.81 | 29 | empty |
| 2 | 61 | 0.50 | 0.85 | 17 | empty |
| 3 | 51 | 0.29 | 0.76 | 13 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P11489
- Elsewhere: UniProt P11489 · AlphaFold DB P11489
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