Research workbench
AlphaFold monomer V2.0 prediction for pyridoxal 5'-phosphate synthase subunit pdxt (Q5L3Y1)
Analyse AlphaFold monomer V2.0 prediction for pyridoxal 5'-phosphate synthase subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q5L3Y1
- Type
- protein
- Length
- 196 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf789E627F24E8c45C688C4DA0DaCF8BD78650716
- Molecule
- Pyridoxal 5'-phosphate synthase subunit pdxt
- UniProt
- Q5L3Y1
- Pockets
- 1 · best druggability 0.38
Structure
1 distinct chain · 32% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pyridoxal 5'-phosphate synthase subunit pdxt | protein | 196 | 32% helix, 33% strand | Q5L3Y1 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.38 | 0.81 | 17 | empty |
Compared structures
- 4WXY · PLPS (inactive glutaminase mutant) co-crystallized with glutamine and R5P. · an experimental structure of the same protein · chain A against F, TM-score 0.98
- 4WXY · Plps (inactive glutaminase mutant) co-crystallized with glutamine and R5P. · an experimental structure of the same protein · chain A against F, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5L3Y1
- Elsewhere: UniProt Q5L3Y1 · AlphaFold DB Q5L3Y1
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