Research workbench
AlphaFold monomer V2.0 prediction for pyridoxal 5'-phosphate synthase subunit pdxs (B1VDJ3)
Analyse AlphaFold monomer V2.0 prediction for pyridoxal 5'-phosphate synthase subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B1VDJ3
- Type
- protein
- Length
- 306 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa73BAb1DabE4333A884D03393eAa10c3B4215494
- Molecule
- Pyridoxal 5'-phosphate synthase subunit pdxs
- UniProt
- B1VDJ3
- Pockets
- 2 · best druggability 0.74
Structure
1 distinct chain · 43% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pyridoxal 5'-phosphate synthase subunit pdxs | protein | 306 | 43% helix, 12% strand | B1VDJ3 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.74 | 0.98 | 24 | empty |
| 2 | 83 | 0.36 | 0.76 | 21 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1VDJ3
- Elsewhere: UniProt B1VDJ3 · AlphaFold DB B1VDJ3
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