Research workbench
AlphaFold monomer V2.0 prediction for pyridoxal kinase (O00764)
Analyse AlphaFold monomer V2.0 prediction for pyridoxal kinase (O00764) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O00764
- Type
- protein
- Length
- 312 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x8DD805493e22E8987a3BbCDFeD5cc3a28Cd35b3f
- Molecule
- Pyridoxal kinase
- UniProt
- O00764
- Pockets
- 2 · best druggability 0.79
Structure
1 distinct chain · 40% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pyridoxal kinase | protein | 312 | 40% helix, 23% strand | O00764 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 599 | 0.79 | 0.84 | 55 | empty |
| 2 | 111 | 0.37 | 0.74 | 19 | empty |
Compared structures
- 4EN4 · Crystal Structure of the Ternary Human PL Kinase-Ginkgotoxin-MgATP Complex · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 4EN4 · Crystal structure of the ternary human pl kinase-ginkgotoxin-mgatp complex · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 3FHX · Crystal structure of D235A mutant of human pyridoxal kinase · an experimental structure of the same protein · chain A against B, TM-score 0.98
- 3FHX · Crystal structure of D235A mutant of human pyridoxal kinase · an experimental structure of the same protein · chain A against B, TM-score 0.98
- 2F7K · Crystal Structure of Human Pyridoxal Kinase · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 2F7K · Crystal structure of human pyridoxal kinase · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 2YXU · Human pyridoxal kinase · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 2YXU · Human Pyridoxal Kinase · an experimental structure of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O00764
- Elsewhere: UniProt O00764 · AlphaFold DB O00764
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