Research workbench
AlphaFold monomer V2.0 prediction for pyridoxine 5'-phosphate synthase (Q3JQ80)
Analyse AlphaFold monomer V2.0 prediction for pyridoxine 5'-phosphate synthase (Q3JQ80) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q3JQ80
- Type
- protein
- Length
- 257 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xB00e4078924fAA25591B0a231c32CcF455f85C70
- Molecule
- Pyridoxine 5'-phosphate synthase
- UniProt
- Q3JQ80
- Pockets
- 2 · best druggability 0.58
Structure
1 distinct chain · 47% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pyridoxine 5'-phosphate synthase | protein | 257 | 47% helix, 17% strand | Q3JQ80 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 248 | 0.58 | 0.79 | 29 | empty |
| 2 | 52 | 0.30 | 0.76 | 10 | empty |
Compared structures
- 3GK0 · Crystal structure of pyridoxal phosphate biosynthetic protein from burkholderia… · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 3GK0 · Crystal structure of pyridoxal phosphate biosynthetic protein from Burkholderia… · an experimental structure of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3JQ80
- Elsewhere: UniProt Q3JQ80 · AlphaFold DB Q3JQ80
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