Research workbench
AlphaFold monomer V2.0 prediction for DNA polymerase sliding clamp (O73947)
Analyse AlphaFold monomer V2.0 prediction for DNA polymerase sliding clamp (O73947) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O73947
- Type
- protein
- Length
- 249 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x80D2ac0F5e3268bC5C1d28BBAA07E3169BB02b79
- Molecule
- DNA polymerase sliding clamp
- UniProt
- O73947
- Pockets
- 1 · best druggability 0.32
Structure
1 distinct chain · 16% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA polymerase sliding clamp | protein | 249 | 16% helix, 47% strand | O73947 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 64 | 0.32 | 0.76 | 15 | empty |
Compared structures
- 3A2F · Crystal Structure of Pyrococcus furiosus DNA polymerase/PCNA monomer mutant complex · an experimental structure of the same protein · chain A against B, TM-score 0.96
- 3A2F · Crystal structure of pyrococcus furiosus DNA POLYMERASE/PCNA monomer mutant complex · an experimental structure of the same protein · chain A against B, TM-score 0.96
- 1IZ4 · Pyrococcus furiosus PCNA mutant (MET73LEU/ASP143ALA): tetragonal form · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 1IZ4 · Pyrococcus furiosus PCNA mutant (Met73Leu/Asp143Ala): tetragonal form · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 1ISQ · Pyrococcus furiosus PCNA complexed with RFCL PIP-box peptide · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 1ISQ · Pyrococcus furiosus PCNA complexed with rfcl pip-box peptide · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 5AUJ · Pyrococcus furiosus proliferating cell nuclear antigen (PCNA) semet derivative · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 5AUJ · Pyrococcus furiosus proliferating cell nuclear antigen (PCNA) SeMet derivative · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 1GE8 · Proliferating cell nuclear antigen (PCNA) homolog from pyrococcus furiosus · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 1GE8 · Proliferating cell nuclear antigen (PCNA) homolog from pyrococcus furiosus · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 1IZ5 · Pyrococcus furiosus PCNA mutant (Met73Leu, Asp143Ala, Asp147Ala): orthorhombic form · an experimental structure of the same protein · chain A against A, TM-score 0.92
- 1IZ5 · Pyrococcus furiosus PCNA mutant (MET73LEU, ASP143ALA, ASP147ALA): orthorhombic form · an experimental structure of the same protein · chain A against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O73947
- Elsewhere: UniProt O73947 · AlphaFold DB O73947
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