Research workbench
AlphaFold monomer V2.0 prediction for protocadherin-20 (Q8N6Y1)
Analyse AlphaFold monomer V2.0 prediction for protocadherin-20 (Q8N6Y1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8N6Y1
- Type
- protein
- Length
- 951 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x767E841c23C1fCf898B47f3029614c98232Bf0FC
- Molecule
- Protocadherin-20
- UniProt
- Q8N6Y1
- Pockets
- 4 · best druggability 0.50
Structure
1 distinct chain · 7% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protocadherin-20 | protein | 951 | 7% helix, 36% strand | Q8N6Y1 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 193 | 0.50 | 0.77 | 35 | empty |
| 2 | 109 | 0.41 | 0.77 | 21 | empty |
| 3 | 131 | 0.39 | 0.74 | 21 | empty |
| 4 | 85 | 0.32 | 0.73 | 18 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8N6Y1
- Elsewhere: UniProt Q8N6Y1 · AlphaFold DB Q8N6Y1
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