Research workbench
AlphaFold monomer V2.0 prediction for penicillin-binding protein 2A (P54488)
Analyse AlphaFold monomer V2.0 prediction for penicillin-binding protein 2A (P54488) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P54488
- Type
- protein
- Length
- 716 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa02b5090CBcB455f0D7C37e6025D7C5a50E46d18
- Molecule
- Penicillin-binding protein 2A
- UniProt
- P54488
- Pockets
- 6 · best druggability 0.66
Structure
1 distinct chain · 40% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Penicillin-binding protein 2A | protein | 716 | 40% helix, 21% strand | P54488 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 439 | 0.66 | 0.79 | 56 | empty |
| 2 | 380 | 0.64 | 0.79 | 43 | empty |
| 3 | 134 | 0.49 | 0.79 | 24 | empty |
| 4 | 92 | 0.43 | 0.79 | 19 | empty |
| 5 | 76 | 0.42 | 0.80 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P54488
- Elsewhere: UniProt P54488 · AlphaFold DB P54488
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