Research workbench
AlphaFold monomer V2.0 prediction for calpain-like protease PALB/RIM13 (Q9Y6Z8)
Analyse AlphaFold monomer V2.0 prediction for calpain-like protease PALB/RIM13 (Q9Y6Z8) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9Y6Z8
- Type
- protein
- Length
- 854 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x79a905d858Ce72991FD6E7a9C6498620f42E146D
- Molecule
- Calpain-like protease PALB/RIM13
- UniProt
- Q9Y6Z8
- Pockets
- 15 · best druggability 0.72
Structure
1 distinct chain · 21% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Calpain-like protease PALB/RIM13 | protein | 854 | 21% helix, 35% strand | Q9Y6Z8 |
Pockets
15 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 778 | 0.72 | 0.78 | 76 | empty |
| 2 | 560 | 0.64 | 0.76 | 48 | empty |
| 3 | 205 | 0.60 | 0.81 | 26 | empty |
| 4 | 95 | 0.57 | 0.86 | 17 | empty |
| 5 | 198 | 0.53 | 0.78 | 27 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y6Z8
- Elsewhere: UniProt Q9Y6Z8 · AlphaFold DB Q9Y6Z8
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