Research workbench
AlphaFold monomer V2.0 prediction for pup--protein ligase (D2NT93)
Analyse AlphaFold monomer V2.0 prediction for pup--protein ligase (D2NT93) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- D2NT93
- Type
- protein
- Length
- 490 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa73BAb1DabE4333A884D03393eAa10c3B4215494
- Molecule
- Pup--protein ligase
- UniProt
- D2NT93
- Pockets
- 7 · best druggability 0.75
Structure
1 distinct chain · 42% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pup--protein ligase | protein | 490 | 42% helix, 16% strand | D2NT93 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 82 | 0.75 | 0.98 | 21 | empty |
| 2 | 297 | 0.57 | 0.77 | 46 | empty |
| 3 | 93 | 0.50 | 0.82 | 22 | empty |
| 4 | 170 | 0.50 | 0.78 | 27 | empty |
| 5 | 86 | 0.36 | 0.75 | 16 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D2NT93
- Elsewhere: UniProt D2NT93 · AlphaFold DB D2NT93
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