Research workbench
AlphaFold monomer V2.0 prediction for pup--protein ligase (Q8NQE1)
Analyse AlphaFold monomer V2.0 prediction for pup--protein ligase (Q8NQE1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8NQE1
- Type
- protein
- Length
- 482 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x407F95e705Dc2c05f8619606Ca4E9f2a932659E6
- Molecule
- Pup--protein ligase
- UniProt
- Q8NQE1
- Pockets
- 3 · best druggability 0.71
Structure
1 distinct chain · 41% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pup--protein ligase | protein | 482 | 41% helix, 17% strand | Q8NQE1 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 608 | 0.71 | 0.80 | 84 | empty |
| 2 | 146 | 0.58 | 0.83 | 18 | empty |
| 3 | 249 | 0.53 | 0.76 | 30 | empty |
Compared structures
- 4BJR · Crystal structure of the complex between Prokaryotic Ubiquitin-like Protein Pup and its… · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 4BJR · Crystal structure of the complex between prokaryotic ubiquitin-like protein pup and its… · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 4B0T · Structure of the Pup Ligase PafA of the Prokaryotic Ubiquitin-like Modification Pathway… · an experimental structure of the same protein · chain A against A, TM-score 0.88
- 4B0T · Structure of the pup ligase pafa of the prokaryotic ubiquitin-like modification pathway… · an experimental structure of the same protein · chain A against A, TM-score 0.88
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NQE1
- Elsewhere: UniProt Q8NQE1 · AlphaFold DB Q8NQE1
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