Research workbench
AlphaFold monomer V2.0 prediction for medium-wave-sensitive opsin 3 (P0DN78)
Analyse AlphaFold monomer V2.0 prediction for medium-wave-sensitive opsin 3 (P0DN78) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0DN78
- Type
- protein
- Length
- 364 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa870d516e0F9a40516E0De78529921327CFBc8ee
- Molecule
- Medium-wave-sensitive opsin 3
- UniProt
- P0DN78
- Pockets
- 3 · best druggability 0.75
Structure
1 distinct chain · 68% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Medium-wave-sensitive opsin 3 | protein | 364 | 68% helix, 2% strand | P0DN78 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 157 | 0.75 | 0.92 | 28 | empty |
| 2 | 682 | 0.71 | 0.78 | 48 | empty |
| 3 | 357 | 0.58 | 0.76 | 45 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DN78
- Elsewhere: UniProt P0DN78 · AlphaFold DB P0DN78
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