Research workbench

AlphaFold monomer V2.0 prediction for rhodopsin (Q90373)

Analyse AlphaFold monomer V2.0 prediction for rhodopsin (Q90373) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q90373
Type: protein
Length: 289 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x4Ef77Afb5a3D9F41c95Be3227D1CC986CCb61835
Molecule: Rhodopsin
UniProt: Q90373
Pockets: 4 · best druggability 0.74

Structure

1 distinct chain · 78% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Rhodopsin	protein	289	78% helix, 3% strand	Q90373

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	74	0.74	0.97	19	empty
2	52	0.72	0.99	18	empty
3	321	0.58	0.76	38	empty
4	51	0.27	0.74	16	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q90373
Elsewhere: UniProt Q90373 · AlphaFold DB Q90373

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