Research workbench
AlphaFold monomer V2.0 prediction for rhodopsin (O16017)
Analyse AlphaFold monomer V2.0 prediction for rhodopsin (O16017) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O16017
- Type
- protein
- Length
- 301 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x35612D34a32C306CA4fc1edA9360D1F717e25950
- Molecule
- Rhodopsin
- UniProt
- O16017
- Pockets
- 4 · best druggability 0.78
Structure
1 distinct chain · 80% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rhodopsin | protein | 301 | 80% helix, 2% strand | O16017 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 91 | 0.78 | 0.98 | 19 | empty |
| 2 | 114 | 0.52 | 0.81 | 20 | empty |
| 3 | 52 | 0.32 | 0.77 | 14 | empty |
| 4 | 79 | 0.31 | 0.73 | 21 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O16017
- Elsewhere: UniProt O16017 · AlphaFold DB O16017
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