Research workbench
AlphaFold monomer V2.0 prediction for rhodopsin (Q6W3E1)
Analyse AlphaFold monomer V2.0 prediction for rhodopsin (Q6W3E1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q6W3E1
- Type
- protein
- Length
- 348 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9B130d619fCFc21d0D08E5Ce38Cf42A5fbe230CB
- Molecule
- Rhodopsin
- UniProt
- Q6W3E1
- Pockets
- 2 · best druggability 0.80
Structure
1 distinct chain · 70% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rhodopsin | protein | 348 | 70% helix, 4% strand | Q6W3E1 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 111 | 0.80 | 0.98 | 28 | empty |
| 2 | 558 | 0.73 | 0.81 | 56 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6W3E1
- Elsewhere: UniProt Q6W3E1 · AlphaFold DB Q6W3E1
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