Research workbench
AlphaFold monomer V2.0 prediction for rhodopsin (O42301)
Analyse AlphaFold monomer V2.0 prediction for rhodopsin (O42301) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O42301
- Type
- protein
- Length
- 289 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xA8A8df2650b519B7097602f8710aaDf92bCe131e
- Molecule
- Rhodopsin
- UniProt
- O42301
- Pockets
- 3 · best druggability 0.75
Structure
1 distinct chain · 78% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rhodopsin | protein | 289 | 78% helix, 3% strand | O42301 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 87 | 0.75 | 0.96 | 23 | empty |
| 2 | 59 | 0.72 | 0.98 | 16 | empty |
| 3 | 127 | 0.42 | 0.75 | 17 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O42301
- Elsewhere: UniProt O42301 · AlphaFold DB O42301
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