Research workbench
AlphaFold monomer V2.0 prediction for rhodopsin (O42300)
Analyse AlphaFold monomer V2.0 prediction for rhodopsin (O42300) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O42300
- Type
- protein
- Length
- 289 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xC6d8e444559A33e69442429BC602d8aa0284A033
- Molecule
- Rhodopsin
- UniProt
- O42300
- Pockets
- 2 · best druggability 0.82
Structure
1 distinct chain · 75% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rhodopsin | protein | 289 | 75% helix, 3% strand | O42300 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 158 | 0.82 | 0.97 | 29 | empty |
| 2 | 145 | 0.45 | 0.76 | 20 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O42300
- Elsewhere: UniProt O42300 · AlphaFold DB O42300
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