Research workbench
AlphaFold monomer V2.0 prediction for rhodopsin (Q17094)
Analyse AlphaFold monomer V2.0 prediction for rhodopsin (Q17094) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q17094
- Type
- protein
- Length
- 439 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x05D249E48b5e19C17E7AE90Ad57354470160c428
- Molecule
- Rhodopsin
- UniProt
- Q17094
- Pockets
- 4 · best druggability 0.81
Structure
1 distinct chain · 66% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rhodopsin | protein | 439 | 66% helix, 2% strand | Q17094 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 166 | 0.81 | 0.96 | 27 | empty |
| 2 | 849 | 0.80 | 0.82 | 79 | empty |
| 3 | 74 | 0.39 | 0.78 | 14 | empty |
| 4 | 77 | 0.34 | 0.75 | 12 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q17094
- Elsewhere: UniProt Q17094 · AlphaFold DB Q17094
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