Research workbench
AlphaFold monomer V2.0 prediction for probable aspartic-type endopeptidase opsb (Q8NKB6)
Analyse AlphaFold monomer V2.0 prediction for probable aspartic-type endopeptidase opsb… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8NKB6
- Type
- protein
- Length
- 487 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x1ED4a68B4011314730adE976b56Ad4cA21b54dcD
- Molecule
- Probable aspartic-type endopeptidase opsb
- UniProt
- Q8NKB6
- Pockets
- 5 · best druggability 0.60
Structure
1 distinct chain · 11% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable aspartic-type endopeptidase opsb | protein | 487 | 11% helix, 34% strand | Q8NKB6 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 463 | 0.60 | 0.75 | 49 | empty |
| 2 | 140 | 0.56 | 0.82 | 29 | empty |
| 3 | 92 | 0.39 | 0.77 | 21 | empty |
| 4 | 76 | 0.35 | 0.76 | 17 | empty |
| 5 | 54 | 0.25 | 0.72 | 15 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NKB6
- Elsewhere: UniProt Q8NKB6 · AlphaFold DB Q8NKB6
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