Research workbench
AlphaFold monomer V2.0 prediction for oligopeptide transport system permease protein oppb (P0AFH2)
Analyse AlphaFold monomer V2.0 prediction for oligopeptide transport system permease… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0AFH2
- Type
- protein
- Length
- 306 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xb1D0f67d3BC2C805BBB719Afc6DA02f0d03Dea70
- Molecule
- Oligopeptide transport system permease protein oppb
- UniProt
- P0AFH2
- Pockets
- 4 · best druggability 0.59
Structure
1 distinct chain · 77% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Oligopeptide transport system permease protein oppb | protein | 306 | 77% helix, 1% strand | P0AFH2 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 113 | 0.59 | 0.86 | 21 | empty |
| 2 | 91 | 0.35 | 0.74 | 23 | empty |
| 3 | 80 | 0.34 | 0.75 | 14 | empty |
| 4 | 54 | 0.28 | 0.74 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AFH2
- Elsewhere: UniProt P0AFH2 · AlphaFold DB P0AFH2
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