Research workbench
AlphaFold monomer V2.0 prediction for melanopsin-a (Q2KNE5)
Analyse AlphaFold monomer V2.0 prediction for melanopsin-a (Q2KNE5) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q2KNE5
- Type
- protein
- Length
- 593 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5881B09f2D8e743400698633641fc1cD2Ed2BE6F
- Molecule
- Melanopsin-a
- UniProt
- Q2KNE5
- Pockets
- 5 · best druggability 0.77
Structure
1 distinct chain · 48% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Melanopsin-a | protein | 593 | 48% helix, 1% strand | Q2KNE5 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 90 | 0.77 | 0.98 | 18 | empty |
| 2 | 411 | 0.65 | 0.78 | 55 | empty |
| 3 | 82 | 0.37 | 0.76 | 14 | empty |
| 4 | 75 | 0.33 | 0.75 | 18 | empty |
| 5 | 65 | 0.33 | 0.75 | 14 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2KNE5
- Elsewhere: UniProt Q2KNE5 · AlphaFold DB Q2KNE5
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