Research workbench
AlphaFold monomer V2.0 prediction for glucans biosynthesis protein D (Q8P3C6)
Analyse AlphaFold monomer V2.0 prediction for glucans biosynthesis protein D (Q8P3C6) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8P3C6
- Type
- protein
- Length
- 533 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7012c0b45c68a2c067644b9d3e5DDa06892c6957
- Molecule
- Glucans biosynthesis protein D
- UniProt
- Q8P3C6
- Pockets
- 7 · best druggability 0.62
Structure
1 distinct chain · 10% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glucans biosynthesis protein D | protein | 533 | 10% helix, 43% strand | Q8P3C6 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 277 | 0.62 | 0.80 | 39 | empty |
| 2 | 136 | 0.58 | 0.83 | 31 | empty |
| 3 | 218 | 0.56 | 0.78 | 27 | empty |
| 4 | 75 | 0.44 | 0.81 | 26 | empty |
| 5 | 88 | 0.41 | 0.78 | 20 | empty |
Compared structures
- 8X18 · Xanthomonas campestris pv. campestris OpgD mutant-D379N with beta-1,2-glucan · an experimental structure of the same protein · chain A against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8P3C6
- Elsewhere: UniProt Q8P3C6 · AlphaFold DB Q8P3C6
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