Research workbench
AlphaFold monomer V2.0 prediction for opacity protein OPA60 (Q04884)
Analyse AlphaFold monomer V2.0 prediction for opacity protein OPA60 (Q04884) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q04884
- Type
- protein
- Length
- 238 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x6c0ed31180Cc0c9710f03b1b73d6101358ba9204
- Molecule
- Opacity protein OPA60
- UniProt
- Q04884
- Pockets
- 3 · best druggability 0.68
Structure
1 distinct chain · 1% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Opacity protein OPA60 | protein | 238 | 1% helix, 48% strand | Q04884 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 318 | 0.68 | 0.82 | 37 | empty |
| 2 | 77 | 0.37 | 0.78 | 21 | empty |
| 3 | 75 | 0.36 | 0.77 | 19 | empty |
Compared structures
- 2MAF · Solution structure of opa60 from n. gonorrhoeae · an experimental structure of the same protein · chain A against A, TM-score 0.50
- 2MAF · Solution structure of OPA60 from N. gonorrhoeae · an experimental structure of the same protein · chain A against A, TM-score 0.50
- 2MLH · NMR Solution Structure of Opa60 from N. Gonorrhoeae in FC-12 Micelles · an experimental structure of the same protein · chain A against A, TM-score 0.44
- 2MLH · NMR solution structure of OPA60 from N. gonorrhoeae in Fc-12 micelles · an experimental structure of the same protein · chain A against A, TM-score 0.44
- 8QWQ · Magic-angle spinning NMR Structure of Opa60 in Lipid Bilayers · an experimental structure of the same protein · chain A against A, TM-score 0.40
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q04884
- Elsewhere: UniProt Q04884 · AlphaFold DB Q04884
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.