Research workbench
AlphaFold monomer V2.0 prediction for outer membrane porin F (P02931)
Analyse AlphaFold monomer V2.0 prediction for outer membrane porin F (P02931) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P02931
- Type
- protein
- Length
- 362 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9e5E98E011361C5888c92e2CDb7652E02Bd5C7Ed
- Molecule
- Outer membrane porin F
- UniProt
- P02931
- Pockets
- 2 · best druggability 0.79
Structure
1 distinct chain · 5% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Outer membrane porin F | protein | 362 | 5% helix, 57% strand | P02931 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1110 | 0.79 | 0.81 | 91 | empty |
| 2 | 215 | 0.66 | 0.84 | 28 | empty |
Compared structures
- 6ZHV · Crystal structure of OmpF porin soaked in ciprofloxacin metaloantibiotic · an experimental structure of the same protein · chain A against B, TM-score 0.94
- 6ZHV · Crystal structure of ompf porin soaked in ciprofloxacin metaloantibiotic · an experimental structure of the same protein · chain A against B, TM-score 0.94
- 6ZHP · Crystal structure of OmpF porin soaked in ciprofloxacin metaloantibiotic · an experimental structure of the same protein · chain A against B, TM-score 0.94
- 6ZHP · Crystal structure of ompf porin soaked in ciprofloxacin metaloantibiotic · an experimental structure of the same protein · chain A against B, TM-score 0.94
- 8C7L · Serendipitous structure of OmpF contaminant in space group P21. · an experimental structure of the same protein · chain A against F, TM-score 0.94
- 5NUO · Structural basis for maintenance of bacterial outer membrane lipid asymmetry · an experimental structure of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02931
- Elsewhere: UniProt P02931 · AlphaFold DB P02931
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