Research workbench
AlphaFold monomer V2.0 prediction for outer membrane protein a (P38399)
Analyse AlphaFold monomer V2.0 prediction for outer membrane protein a (P38399) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P38399
- Type
- protein
- Length
- 353 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x357494D6985DbB6d0e40B74Bc031C05d59768EB4
- Molecule
- Outer membrane protein a
- UniProt
- P38399
- Pockets
- 3 · best druggability 0.52
Structure
1 distinct chain · 15% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Outer membrane protein a | protein | 353 | 15% helix, 45% strand | P38399 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.52 | 0.84 | 16 | empty |
| 2 | 87 | 0.46 | 0.81 | 17 | empty |
| 3 | 83 | 0.33 | 0.74 | 14 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38399
- Elsewhere: UniProt P38399 · AlphaFold DB P38399
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